Data Carpentry Workshop

Registrations will be open from 13/09/24 to 04/10/24. The Data Carpentry workshop will take place in Strasbourg on 17-18, October 2024.

What is a Data Carpentry workshop?

A Data Carpentry workshop is a hands-on training that covers the introductory computational skills needed for data management and analysis in all domains of research. Our lessons are build on the existing knowledge of learners to enable them to quickly apply skills learned to their own research. Our initial target audience is learners who have little to no prior computational experience. We create a friendly environment for learning to empower researchers and enable data driven discovery.

Short tutorials alternate with practical exercises, and all instruction is done via live coding. A Carpentry workshop is taught by at least one trained and badged instructor. Over the course of the workshop, instructors teach the curriculum called "Genomics". The focus of the workshop is on working with genomics data, and data management and analysis for genomics research, including best practices for organization of bioinformatics projects and data, use of command line utilities, use of command line tools to analyze sequence quality and perform variant calling, and connecting to and using cloud computing.

Curriculum is available online

Local session

Dates confirmed: 17-18/10/2024, 9am-5pm

Program and requirements : https://unistra.github.io/2024-10-17-strasbourg/

The lessons of the workshop are to teach:

  1. best practices for organization of bioinformatics projects and data
  2. use of command-line utilities
  3. use of command-line tools to analyze sequence quality and perform variant calling
  4. and connecting to and using cloud computing

Module under development (Data Analysis and Visualization in R) is not included in this 2 day workshop. If you are interested to follow this module, please send us an e-mail, we will take your needs into account when planning next worshops in 2025.

Prerequisites:

This lesson assumes that learners have no prior experience with the tools covered in the workshop. However, learners are expected to have some familiarity with biological concepts, including the concept of genomic variation within a population. Participants should bring their own laptops and plan to participate actively.

 

Software to install:

To participate in a Data Carpentry workshop, you will need access to software as described below. In addition, you will need an up-to-date web browser.

We maintain a list of common issues that occur during installation as a reference for instructors that may be useful on the Configuration Problems and Solutions wiki page.

The setup instructions for the Data Carpentry Genomics workshops can be found at the workshop overview site. In this workshop, we will run commands and programs on local machines, hence falling within "Option B" of the setup instructions.

We advise participants to wait before installing software and downloading data, as more detailed instructions will be provided shortly.

You feel lost and need help before the workshop? We can provide help setting up your laptop, on campus and online.

Ask for help at: openaccessmonth[at]unistra.fr

You can ask for help during face to face sessions :

Make & Code sessions on Tuesdays (Lab numérique, Atrium, Esplanade Campus)

Make & Code sessions on Thursdays (Lab numérique, Atrium, Esplanade Campus)

 

Have a look on the standard curriculum: Genomics

 

Pre and Post -workshop Surveys

Instructors need to know more about your expections and level of satisfaction: the Pre-Workshop & post-workshop surveys are available online.

Who?

PhD students, researchers and technical staff from the University of Strasbourg, France.

PhD students' registrations will be privileged.

Researchers from all domains of science can apply. Number of participants limited to 20 participants.

Where?

Campus of Medecine : Cardo: IEEPI: Training Room

Lunch breaks : available soon

 

Access to Campus :

Cardo

IEEPI Institut Européen Entreprises Propriété Intellectuelle

7, rue l'écarlate

67000 Strasbourg

Main Entry -> see map

Download campus map here (in French only).

When?

Dates confirmed: 17-18/10/2024, 9am-5pm

Language

Support and course will be given in English. Instructors & helpers speak English and French as well.

Register

Registrations are open from 13/09/2024 to 04/10/2024.

How to register to the workshop?

Please send an e-mail to: openaccessmonth[at]unistra.fr

indicating your first and last names, e-mail address + your research topic(s) and your motivation to participate in this 2 day-workshop (3 sentences will be enough).

Depending on your profile: mention your doctoral school, research units and/or department of affiliation at the University of Strasbourg and its partners.

We will accept your request subject to your commitment to attend both workshop days.

We are very happy to see you in October, 2024!

Fees and credits

There is no fee to pay to attend this workshop.

PhD students who have attended both days receive credits.